Detalhe da pesquisa
1.
Hepatitis C virus RNA is 5'-capped with flavin adenine dinucleotide.
Nature
; 619(7971): 811-818, 2023 Jul.
Artigo
Inglês
| MEDLINE | ID: mdl-37407817
2.
Conformational heterogeneity of UCAAUC RNA oligonucleotide from molecular dynamics simulations, SAXS, and NMR experiments.
RNA
; 28(7): 937-946, 2022 07.
Artigo
Inglês
| MEDLINE | ID: mdl-35483823
3.
Integrated NMR/Molecular Dynamics Determination of the Ensemble Conformation of a Thermodynamically Stable CUUG RNA Tetraloop.
J Am Chem Soc
; 145(30): 16557-16572, 2023 08 02.
Artigo
Inglês
| MEDLINE | ID: mdl-37479220
4.
Integrating NMR and simulations reveals motions in the UUCG tetraloop.
Nucleic Acids Res
; 48(11): 5839-5848, 2020 06 19.
Artigo
Inglês
| MEDLINE | ID: mdl-32427326
5.
Conformational Ensembles of Noncoding Elements in the SARS-CoV-2 Genome from Molecular Dynamics Simulations.
J Am Chem Soc
; 143(22): 8333-8343, 2021 06 09.
Artigo
Inglês
| MEDLINE | ID: mdl-34039006
6.
Barnaba: software for analysis of nucleic acid structures and trajectories.
RNA
; 25(2): 219-231, 2019 02.
Artigo
Inglês
| MEDLINE | ID: mdl-30420522
7.
Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution.
PLoS Comput Biol
; 16(4): e1007870, 2020 04.
Artigo
Inglês
| MEDLINE | ID: mdl-32339173
8.
RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.
Chem Rev
; 118(8): 4177-4338, 2018 04 25.
Artigo
Inglês
| MEDLINE | ID: mdl-29297679
9.
A nucleobase-centered coarse-grained representation for structure prediction of RNA motifs.
Nucleic Acids Res
; 46(4): 1674-1683, 2018 02 28.
Artigo
Inglês
| MEDLINE | ID: mdl-29272539
10.
Effects and limitations of a nucleobase-driven backmapping procedure for nucleic acids using steered molecular dynamics.
Biochem Biophys Res Commun
; 498(2): 352-358, 2018 03 29.
Artigo
Inglês
| MEDLINE | ID: mdl-29248728
11.
RNA folding pathways in stop motion.
Nucleic Acids Res
; 44(12): 5883-91, 2016 07 08.
Artigo
Inglês
| MEDLINE | ID: mdl-27091499
12.
Mapping the Universe of RNA Tetraloop Folds.
Biophys J
; 113(2): 257-267, 2017 Jul 25.
Artigo
Inglês
| MEDLINE | ID: mdl-28673616
13.
Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments.
Nucleic Acids Res
; 43(15): 7260-9, 2015 Sep 03.
Artigo
Inglês
| MEDLINE | ID: mdl-26187990
14.
The role of nucleobase interactions in RNA structure and dynamics.
Nucleic Acids Res
; 42(21): 13306-14, 2014 Dec 01.
Artigo
Inglês
| MEDLINE | ID: mdl-25355509
15.
Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations.
BMC Bioinformatics
; 16 Suppl 9: S6, 2015.
Artigo
Inglês
| MEDLINE | ID: mdl-26051557
16.
Formulation of probabilistic models of protein structure in atomic detail using the reference ratio method.
Proteins
; 82(2): 288-99, 2014 Feb.
Artigo
Inglês
| MEDLINE | ID: mdl-23934827
17.
PHAISTOS: a framework for Markov chain Monte Carlo simulation and inference of protein structure.
J Comput Chem
; 34(19): 1697-705, 2013 Jul 15.
Artigo
Inglês
| MEDLINE | ID: mdl-23619610
18.
Discovering functionally important sites in proteins.
Nat Commun
; 14(1): 4175, 2023 07 13.
Artigo
Inglês
| MEDLINE | ID: mdl-37443362
19.
LLM-PBC: Logic Learning Machine-Based Explainable Rules Accurately Stratify the Genetic Risk of Primary Biliary Cholangitis.
J Pers Med
; 12(10)2022 Sep 26.
Artigo
Inglês
| MEDLINE | ID: mdl-36294727
20.
MEDTEC Students against Coronavirus: Investigating the Role of Hemostatic Genes in the Predisposition to COVID-19 Severity.
J Pers Med
; 11(11)2021 Nov 09.
Artigo
Inglês
| MEDLINE | ID: mdl-34834519